Publications

Jianning Li, Antonio Pepe, Christina Gsaxner, Gijs Luijten, Yuan Jin, Narmada Ambigapathy, Enrico Nasca, Naida Solak, Gian Marco Melito, Afaque R. Memon, Xiaojun Chen, Jan Stefan Kirschke, Ezequiel de la Rosa, Patrick Ferdinand Christ, Hongwei Bran Li, David G. Ellis, Michele R. Aizenberg, Sergios Gatidis, Thomas Küstner, Nadya Shusharina, Nicholas Heller, Vincent Andrearczyk, Adrien Depeursinge, Mathieu Hatt, Anjany Sekuboyina, Maximilian Löffler, Hans Liebl, Reuben Dorent, Tom Vercauteren, Jonathan Shapey, Aaron Kujawa, Stefan Cornelissen, Patrick Langenhuizen, Achraf Ben-Hamadou, Ahmed Rekik, Sergi Pujades, Edmond Boyer, Federico Bolelli, Costantino Grana, Luca Lumetti, Hamidreza Salehi, Jun Ma, Yao Zhang, Ramtin Gharleghi, Susann Beier, Arcot Sowmya, Eduardo A. Garza-Villarreal, Thania Balducci, Diego Angeles-Valdez, Roberto Souza, Leticia Rittner, Richard Frayne, Yuanfeng Ji, Soumick Chatterjee, Andreas N ¨urnberger, Joao Pedrosa, Carlos Ferreira, Guilherme Aresta, Ant ´onio Cunha, Aur ´elio Campilho, Yannick Suter, Jose Garcia, Alain Lalande, Emmanuel Audenaert, Claudia Krebs, Timo Van Leeuwen, Evie Vereecke, Rainer Röhrig, Frank Hölzle, Vahid Badeli, Kathrin Krieger, Matthias Gunzer, Jianxu Chen, Amin Dada, Miriam Balzer, Jana Fragemann, Frederic Jonske, Moritz Rempe, Stanislav Malorodov, Fin H. Bahnsen, Constantin Seibold, Alexander Jaus, Ana Sofia Santos, Mariana Lindo, Andre Ferreira, Victor Alves, Michael Kamp, Amr Abourayya, Felix Nensa, Fabian Hörst, Alexander Brehmer, Lukas Heine, Lars E. Podleska, Matthias A. Fink, Julius Keyl, Konstantinos Tserpes, Moon-Sung Kim, Shireen Elhabian, Hans Lamecker, Dzenan Zukic, Beatriz Paniagua, Christian Wachinger, Martin Urschler, Luc Duong, Jakob Wasserthal, Peter F. Hoyer, Oliver Basu, Thomas Maal, Max J. H. Witjes, Ping Luo, Bjoern Menze, Mauricio Reyes, Christos Davatzikos, Behrus Puladi, Jens Kleesiek, Jan Egger (2023). MedShapeNet - A Large Scale Dataset of 3D Medical Shapes for Computer Vision. submitted to IEEE Transactions on Pattern Analysis and Machine Intelligence.

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Abdullah Barhoum (2022). Deep Learning and Image Pyramids for Aorta Segmentation. Master Thesis in Computer Science at Freie Universität Berlin.

Leonid Goubergrits, Katharina Vellguth, Lukas Obermeier, Adriano Schlief, Lennart Tautz, Jan Brüning, Hans Lamecker, Angelika Szengel, Olena Nemchyna, Christoph Knosalla, Titus Kuehne, Natalia Solowjowa (2022). CT-based Analysis of Left Ventricular Hemodynamics Using Statistical Shape Modelling and Computational Fluid Dynamics. Front. Cardiovasc. Med..

DOI

Pavlo Yevtushenko, Leonid Goubergrits, Lina Gundelwein, Arnaud Setio, Tobias Heimann, Heiko Ramm, Hans Lamecker, Titus Kuehne, Alexander Meyer, Marie Schafstedde (2021). Deep Learning Based Centerline Aggregated Aortic Hemodynamics: An Efficient Alternative to Numerical Modelling of Hemodynamics. IEEE Journal of Biomedical and Health Informatics.

DOI

Anjany Sekuboyina, Malek E. Husseini, Amirhossein Bayat, Maximilian Löffler, Hans Liebl, Hongwei Li, Giles Tetteh, Jan Kukačka, Christian Payer, Darko Štern, Martin Urschler, Maodong Chen, Dalong Cheng, Nikolas Lessmann, Yujin Hu, Tianfu Wang, Dong Yang, Daguang Xu, Felix Ambellan, Tamaz Amiranashvili, Moritz Ehlke, Hans Lamecker, Sebastian Lehnert, Marilia Lirio, Nicolás Pérez de Olaguer, Heiko Ramm, Manish Sahu, Alexander Tack, Stefan Zachow, Tao Jiang, Xinjun Ma, Christoph Angerman, Xin Wang, Kevin Brown, Alexandre Kirszenberg, Élodie Puybareau, Di Chen, Yiwei Bai, Brandon H. Rapazzo, Timyoas Yeah, Amber Zhang, Shangliang Xu, Feng Hou, Zhiqiang He, Chan Zeng, Zheng Xiangshang, Xu Liming, Tucker J. Netherton, Raymond P. Mumme, Laurence E. Court, Zixun Huang, Chenhang He, Li-Wen Wang, Sai Ho Ling, Lê Duy Huỳnh, Nicolas Boutry, Roman Jakubicek, Jiri Chmelik, Supriti Mulay, Mohanasankar Sivaprakasam, Johannes C. Paetzold, Suprosanna Shit, Ivan Ezhov, Benedikt Wiestler, Ben Glocker, Alexander Valentinitsch, Markus Rempfler, Björn H. Menze, Jan S. Kirschke (2021). VerSe: a Vertebrae Labelling and Segmentation Benchmark for Multi-Detector CT Images. Medical Image Analysis, Volume 73, October 2021, 102166.

Code DOI

Jianning Li, Pedro Pimentel, Angelika Szengel, Moritz Ehlke, Hans Lamecker, Stefan Zachow, Laura Estacio, Christian Doenitz, Heiko Ramm, Haochen Shi, Xiaojun Chen, Franco Matzkin, Virginia Newcombe, Enzo Ferrante, Yuan Jin, David G. Ellis, Michele R. Aizenberg, Oldrich Kodym, Michal Spanel, Adam Herout, James G. Mainprize, Zachary Fishman, Michael R. Hardisty, Amirhossein Bayat, Suprosanna Shit, Bomin Wang, Zhi Liu, Matthias Eder, Antonio Pepe, Christina Gsaxner, Victor Alves, Ulrike Zefferer, Gord von Campe, Karin Pistracher, Ute Schäfer, Dieter Schmalstieg, Bjoern H. Menze, Ben Glocker, Jan Egger (2021). AutoImplant 2020 - First MICCAI Challenge on Automatic Cranial Implant Design. IEEE TRANSACTIONS ON MEDICAL IMAGING.

DOI

Laura Estacio, Moritz Ehlke, Alexander Tack, Eveling Castro, Hans Lamecker, Rensso Mora, Stefan Zachow (2021). Unsupervised Detection of Disturbances in 2D Radiographs. IEEE 18th International Symposium on Biomedical Imaging (ISBI), Nice, France, 2021, pp. 367-370.

DOI Conference

Johannes Felde, Thomas Wagner, Hans Lamecker, Christian Doenitz, Lina Gundelwein (2021). Automatic Vessel Segmentation and Aneurysm Detection Pipeline for Numerical Fluid Analysis. Palm C., Deserno T.M., Handels H., Maier A., Maier-Hein K., Tolxdorff T. (eds) Bildverarbeitung für die Medizin 2021. Informatik aktuell. Springer Vieweg, Wiesbaden..

DOI Conference

Bente Thamsen, Pavlo Yevtushenko, Lina Gundelwein, Arnaud Arinda Adiyoso Setio, Hans Lamecker, Marcus Kelm, Marie Schafstedde, Tobias Heimann, Titus Kuehne and Leonid Goubergrits (2021). Synthetic Database of Aortic Morphometry and Hemodynamics: Overcoming Medical Imaging Data Availability. IEEE Transactions on Medical Imaging.

Project DOI

Pedro Pimentel, Angelika Szengel, Moritz Ehlke, Hans Lamecker, Stefan Zachow, Laura Estacio, Christian Doenitz, Heiko Ramm (2020). Automated Virtual Reconstruction of Large Skull Defects Using Statistical Shape Models and Generative Adversarial Networks. Li J., Egger J. (eds) Towards the Automatization of Cranial Implant Design in Cranioplasty. AutoImplant 2020. Lecture Notes in Computer Science, vol 12439. Springer, Cham.

DOI Conference

Bente Thamsen, Pavlo Yevtushenko, Lina Gundelwein, Hans Lamecker, Titus Kühne, Leonid Goubergrits (2020). Unsupervised Learning and Statistical Shape Modeling of the Morphometry and Hemodynamics of Coarctation of the Aorta. Medical Image Computing and Computer Assisted Intervention – MICCAI 2020. MICCAI 2020. Lecture Notes in Computer Science, vol 12264. Springer, Cham..

Project DOI Conference

Nicolás Pérez de Olaguer Santamaría (2020). Anatomical Landmark Detection From X-Ray Images Using Convolutional Neural Networks. Master thesis in Computer Science, Universität Hamburg.

Jan Joris Brüning, Thomas Hildebrandt, Werner Heppt, Nora Schmidt, Hans Lamecker, Angelika Szengel, Natalja Amiridze, Heiko Ramm, Matthias Bindernagel, Stefan Zachow, Leonid Goubergrits (2020). Characterization of the Airflow within an Average Geometry of the Healthy Human Nasal Cavity. Sci Rep 10, 3755.

DOI

Paúl Pauca, Stefan Klein, Hans Lamecker (2020). Automatic Quantification of Hip Osteoarthritis From Low Quality X-Ray Images. Proc. SPIE, Medical Imaging 2020.

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Natalja Amiridze (2020). Morphological Indicators for Limitations in Nasal Breathing. Bachelor thesis in bioinformatics, Freie Universität Berlin.

Karl-Michael Schebesch, Katharina Rosengarth, Alexander Brawanski, Martin Proescholdt, Christina Wendl, Julius Höhne, Christian Ott, Hans Lamecker, Christian Doenitz (2019). Clinical Benefits of Combining Different Visualization Modalities in Neurosurgery. Front. Surg. 6:56.

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Lina Gundelwein, Angelika Szengel, Heiko Ramm, Leonid Goubergrits, Marcus Kelm, Hans Lamecker (2019). Aortic Shape Synthesiser - Understanding Anatomical Variations of the Thoracic Aorta. ESC Congress 2019.

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Felix Ambellan, Hans Lamecker, Christoph von Tycowicz, Stefan Zachow (2019). Statistical Shape Models - Understanding and Mastering Variation in Anatomy. Advances in Experimental Medicine and Biology book series (AEMB, volume 1156).

DOI Preprint Book

Georg Hettich, Ronja Schierjott, Christoph Schilling, Allan Maas, Heiko Ramm, Matthias Bindernagel, Hans Lamecker, Thomas M. Grupp (2019). Validation of a Statistical Shape Model for Acetabular Bone Defect Analysis. Orthopaedic Proceedings Vol. 101-B, No. SUPP_5, International Society for Technology in Arthroplasty (ISTA) 31st Annual Congress, London, England, October 2018. Part 2..

PDF DOI Proceedings

Thomas Hildebrandt, Jan Joris Brüning, Nora Laura Schmidt, Hans Lamecker, Werner Heppt, Stefan Zachow, Leonid Goubergrits (2019). The Healthy Nasal Cavity - Characteristics of Morphology and Related Airflow Based on a Statistical Shape Model Viewed From a Surgeons Perspective. Facial Plast Surg 2019; 35(01): 009-013.

DOI

Thomas Hildebrandt, Jan Joris Brüning, Hans Lamecker, Stefan Zachow, Werner Heppt, Nora Schmidt, Leonid Goubergrits (2019). Digital Analysis of Nasal Airflow Facilitating Decision Support in Rhinosurgery. Facial Plast Surg 2019; 35(01): 003-008.

DOI

Marilia de Almeida Lirio Dourado (2019). Deep Learning for Boundary Detection in Model-Based Segmentation. Master Thesis in Biomedical Computing, Technical University of Munich.

Lina Gundelwein, Heiko Ramm, Leonid Goubergrits, Marcus Kelm, Hans Lamecker (2018). 3D Shape Analysis for Coarctation of the Aorta. Shape in Medical Imaging. MICCAI-ShapeMI 2018. Lecture Notes in Computer Science, vol 11167.

Project DOI

Marcus Roehner (2017). Geometrische Rekonstruktion von Anatomischen Strukturen des Kopfes aus Tomographischen Daten. Master Thesis in Medieninformatik, Beuth Hochschule Berlin.

Felix Ambellan, Alexander Tack, David Wilson, Carolyn Anglin, Hans Lamecker, Stefan Zachow (2017). Evaluating two Methods for Geometry Reconstruction from Sparse Surgical Navigation Data. Proc. 16. Jahrestagung der Deutschen Gesellschaft für Computer-Roboterassistierte Chirurgie (CURAC), vol. 16, pp. 24-30, 2017.

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David Wilson, Carolyn Anglin, Felix Ambellan, Carl Martin Grewe, Alexander Tack, Hans Lamecker, Michael Dunbar, Stefan Zachow (2017). Validation of Three Dimensional Models of the Distal Femur Created From Surgical Navigation Point Cloud Data for Intraoperative and Postoperative Analysis of Total Knee Arthroplasty. International Journal of Computer Assisted Radiology and Surgery volume 12, pp. 2097–2105 (2017).

DOI

Florian Bernard, Luis Salamanca, Johan Thunberg, Alexander Tack, Dennis Jentsch, Hans Lamecker, Stefan Zachow, Frank Hertel, Jorge Goncalves, Peter Gemmar (2017). Shape Aware Surface Reconstruction From Sparse 3D Point Clouds. Medical Image Analysis, Volume 38, May 2017, Pages 77-89.

DOI Preprint

Anirban Mukhopadhyay, Oscar Salvador Morillo Victoria, Stefan Zachow, Hans Lamecker (2016). Robust and Accurate Appearance Models Based on Joint Dictionary Learning: Data From the Osteoarthritis Initiative. Patch-Based Techniques in Medical Imaging. MICCAI-Patch-MI 2016. Lecture Notes in Computer Science, vol 9993.

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Irina Vidal-Migallon, Heiko Ramm, Hans Lamecker (2015). Reconstruction of Partial Liver Shapes Based on a Statistical 3D Shape Model. Proc. Symposium on Statistical Shape Models & Applications (SHAPE), 2015.

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Hans Lamecker, Stefan Zachow (2015). Statistical Shape Modeling of Musculoskeletal Structures and Its Applications. Zheng G., Li S. (eds) Computational Radiology for Orthopaedic Interventions. Lecture Notes in Computational Vision and Biomechanics, vol 23. Springer, Cham (2015).

PDF DOI

Marcus Roehner (2015). Landmarken-basierte 2d-3d Objektpositionierung. Bachelor Thesis in Medieninformatik, Beuth Hochschule Berlin.

Dagmar Kainmueller (2015). Deformable Meshes for Accurate Automatic Segmentation of Medical Image Data. PhD thesis in Computer Science, Universität Lübeck.

DOI

Ingo Todt, Hans Lamecker, Heiko Ramm, Henning Frenzel, Barbara Wollenberg, Thomas Beleites, Thomas Zahnert, Jan Peter Thomas, Stefan Dazert, Arneborg Ernst (2014). Development of a computed tomography data-based Vibrant Bonebridge viewer. HNO 62, 439–442 (2014).

DOI

Tamaz Amiranashvili (2014). Fitting Smooth Strips to Rough Surfaces. Diploma Thesis in Computer Science, Freie Universität Berlin.

Ingo Todt, Hans Lamecker, Heiko Ramm, Arneborg Ernst (2014). A Computed Tomographic Data Based Vibrant Bonebridge Visualization Tool. Cochlear Implants Int. 2014 May;15 Suppl 1:S72-4.

DOI Pubmed

Moritz Ehlke, Thomas Frenzel, Heiko Ramm, Hans Lamecker, Mohsen Akbari Shandiz, Carolyn Anglin, Stefan Zachow (2014). Robust Measurement of Natural Acetabular Orientation From AP Radiographs Using Articulated 3D Shape and Intensity Models. Proc. Int. Society of Computer Assisted Orthopaedic Surgery (CAOS), 2014.

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Hans Lamecker, Hans-Christian Hege, Karsten Tabelow, Jörg Polzehl (2014). Image Processing. MATHEON - Mathematics for Key Technologies (P. Deuflhard et al., eds.), EMS Publishing House, pp. 359-376, 2014.

DOI

Mascha Hochfeld, Hans Lamecker, Ulrich Thomale, Matthias Schulz, Stefan Zachow, Hannes Haberl (2014). Frame Based Cranial Reconstruction. J Neurosurg Pediatr. 2014 Mar;13(3):319-23.

DOI Pubmed

Moritz Ehlke, Heiko Ramm, Hans Lamecker, Hans-Christian Hege, Stefan Zachow (2013). Fast Generation of Virtual X Ray Images for Reconstruction of 3D Anatomy. IEEE Trans Vis Comput Graph. 2013 Dec;19(12):2673-82.

PDF DOI Pubmed

Bruno Kirschner (2013). Interaktives Planungstool Zur 3D Rekonstruktion Von Knochenresektion. Bachelor Thesis in Medieninformatik, Beuth Hochschule Berlin.

Heiko Ramm, Oscar Salvador Morillo Victoria, Ingo Todt, Hartmut Schirmacher, Arneborg Ernst, Stefan Zachow, Hans Lamecker (2013). Visual Support for the Positioning of Hearing Implants. Proc. 12. Jahrestagung der Deutschen Gesellschaft für Computer-Roboterassistierte Chirurgie (CURAC), 2013.

Preprint Conference

Dagmar Kainmueller, Hans Lamecker, Markus Heller, Britta Weber, Hans-Christian Hege, Stefan Zachow (2013). Omnidirectional Displacements for Deformable Surfaces. Medical Image Analysis, 17(4), pp. 429-441, Elsevier, 2013.

DOI Preprint

Carl Martin Grewe, Hans Lamecker, Stefan Zachow (2013). Landmark Based Statistical Shape Analysis. Auxology. Studying Human Growth and Development (M. Hermanussen, ed.), Schweizerbart Science Publishers, Stuttgart, pp. 200-203, 2013.

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Matthias Bindernagel (2013). Articulated Statistical Shape Models. Master thesis in Computer Science, Humboldt-Universität zu Berlin.

Andreas Günther, Hans Lamecker, Martin Weiser (2012). Flexible Shape Matching With Finite Element Based LDDMM. International Journal of Computer Vision, volume 105, pages 128–143 (2013).

DOI Preprint

Max Kahnt, Heiko Ramm, Hans Lamecker, Stefan Zachow (2012). Feature Preserving Multi Material Mesh Generation Using Hierarchical Oracles. Mesh Processing in Medical Image Analysis 2012. MICCAI-MeshMed 2012. Lecture Notes in Computer Science, vol 7599.

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Nguyen The Duy, Hans Lamecker, Dagmar Kainmueller, Stefan Zachow (2012). Automatic Detection and Classification of Teeth in CT Data. Medical Image Computing and Computer-Assisted Intervention – MICCAI 2012. MICCAI 2012. Lecture Notes in Computer Science, vol 7510.

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Moritz Ehlke, Heiko Ramm, Hans Lamecker, Stefan Zachow (2012). Efficient Projection and Deformation of Volumetric Intensity Models for Accurate Simulation of X-Ray Images. Eurographics Workshop on Visual Computing for Biology and Medicine (VCBM), 2012.

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Sara Orgiu (2012). Automatic Liver Segmentation in Contrast Enhanced CT Data Using 3D Free Form Deformation Based on Optimal Graph Searching. Master thesis in Biomedical Engineering, Politecnico di Milano, Italy.

Moritz Ehlke, Heiko Ramm, Hans Lamecker, Xubo Yang, Markus Heller, Stefan Zachow (2012). Fast and Accurate DRRs for X-Ray Based Joint Surgery Planning. Proc. Int. Society of Computer Assisted Orthopaedic Surgery (CAOS), no. 293, 2012.

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Matthias Bindernagel, Dagmar Kainmueller, Heiko Seim, Hans Lamecker, Stefan Zachow (2012). Analysis of Inter Individual Anatomical Shape Variations of Joint Structures. Proc. Int. Society of Computer Assisted Orthopaedic Surgery (CAOS), no. 210, 2012..

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Nguyen The Duy, Hans Lamecker, Dagmar Kainmueller, Stefan Gumhold, Stefan Zachow (2012). Automatic Bone and Tooth Detection for CT Based Dental Implant Planning. Computed maxillofacial imaging in dental implantology. Int J CARS 7, 293–294 (2012).

PDF DOI

Moritz Ehlke (2012). Simulating X Ray Images From Deformable Shape and Intensity Models on the GPU. Master thesis in Computer Science, Technische Universität Berlin.

Max Kahnt (2012). Generation of Contrained High Quality Mult Material Tetrahedral Meshes. Diploma thesis in Mathematics, Freie Universität Berlin.

Nguyen The Duy (2012). Automatic Segmentation for Dental Operation Planning. Diploma thesis in Computer Science, Technische Universität Dresden.

Project

Jana Malinowski (2012). Ein kontinuierliches Optimierungsverfahren für die Segmentierung medizinischer Bilddaten mit Hilfe von Formmodellen. Diploma thesis in Mathematics, Humboldt Universität Berlin.

Max Kahnt, Francis Galloway, Heiko Seim, Hans Lamecker, Mark Taylor, Stefan Zachow (2011). Robust and Intuitive Meshing of Bone Implant Compounds. Proc. 10. Jahrestagung der Deutschen Gesellschaft für Computer-Roboterassistierte Chirurgie (CURAC), pp. 71-74, 2011.

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Carl Martin Grewe, Hans Lamecker, Stefan Zachow (2011). Digital Morphometry the Potential of Statistical Shape Models. Anthropologischer Anzeiger Volume 68 No. 4 (2011), pp. 505-506.

Project DOI

Andreas Günther, Hans Lamecker, Martin Weiser (2011). Direct LDDMM of Discrete Currents With Adaptive Finite Elements. Proc. 3rd MICCAI Workshop on Mathematical Foundations of Computational Anatomy (X. Pennec et al., eds.), pp. 1-15, 2011.

PDF Preprint

Maximilien Renard (2011). Improvement of Image Segmentation Based on Statistical Shape and Intensity Models. Master thesis in Computer Science, Faculté des Sciences Appliquées, Université Libre de Bruxelles.

Judith Berger (2011). Nichtlineare Registrierung Zur Segmentierung Des Musculus Gluteus Medius in CT Daten. Master thesis in Mathematics, Universität zu Lübeck.

Jens von Berg, Jalda Dworzak, Tobias Klinder, Dirk Manke, Adrian Kreth, Hans Lamecker, Stefan Zachow, Cristian Lorenz (2011). Temporal Subtraction of Chest Radiographs Compensating Pose Differences. Proceedings Volume 7962, SPIE Medical Imaging 2011: Image Processing; 79620U (2011).

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Thomas Lange, Silvan Kraft, Sebastian Eulenstein, Hans Lamecker, Peter M. Schlag (2011). Automatic Calibration of 3D Ultrasound Probes. Bildverarbeitung für die Medizin 2011. Informatik aktuell.

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Matthias Bindernagel, Dagmar Kainmueller, Heiko Seim, Hans Lamecker, Stefan Zachow, Hans-Christian Hege (2011). An Articulated Statistical Shape Model of the Human Knee. Bildverarbeitung für die Medizin 2011. Informatik aktuell.

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Hans Lamecker, Tobias Heimann (2011). Bildsegmentierung. Computerassistierte Chirurgie (P. M. Schlag et al., eds.), Urban & Fischer (Elsevier), pp. 63-83, 2011.

DOI Amazon

Stefan Zachow, Kim Kubiack, Jana Malinowski, Hans Lamecker, Harald Essig, Nils-Claudius Gellrich (2010). Modellgestützte chirurgische Rekonstruktion komplexer Mittelgesichtsfrakturen. Biomed Tech 2010; 55 (Suppl. 1), pp. 107-108, 2010 by Walter de Gruyter, Berlin, New York.

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Hans Lamecker, Dagmar Kainmueller, Heiko Seim, Stefan Zachow (2010). Automatische 3D-Rekonstruktion des Unterkiefers und der Mandibulärnerven auf Basis dentaler Bildgebung. Biomed Tech 2010; 55 (Suppl. 1), pp. 35-36, 2010 by Walter de Gruyter, Berlin, New York.

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Antonia Wittmers (2010). Interaktive Erzeugung homöomorpher Netze auf triangulierten Oberflächen. Diploma thesis in Computer Science, Freie Universität Berlin.

Heiko Seim, Dagmar Kainmueller, Hans Lamecker, Matthias Bindernagel, Jana Malinowski, Stefan Zachow (2010). Model Based Auto Segmentation of Knee Bones and Cartilage in MRI Data. Proc. MICCAI workshop Medical Image Analysis for the Clinic: A Grand Challenge (B. v. Ginneken et al., eds.), 2010.

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Dagmar Kainmueller, Hans Lamecker, Heiko Seim, Stefan Zachow, Hans-Christian Hege (2010). Improving Deformable Surface Meshes Through Omni Directional Displacements and MRFs. Jiang T., Navab N., Pluim J.P.W., Viergever M.A. (eds) Medical Image Computing and Computer-Assisted Intervention – MICCAI 2010. MICCAI 2010. Lecture Notes in Computer Science, vol 6361. Springer, Berlin, Heidelberg.

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Hans Lamecker, Xavier Pennec (2010). Atlas to Image With Tumor Registration Based on Demons and Deformation Inpainting. The MIDAS Journal - Computational Imaging Biomarkers for Tumors (CIBT) (2010).

Paper Journal

Jürgen Rybak, Anja Kuss, Hans Lamecker, Stefan Zachow, Hans-Christian Hege, Matthias Lienhard, Jochen Singer, Kerstin Neubert, Randolf Menzel (2010). The Digital Bee Brain: Integrating and Managing Neurons in a Common 3D Reference System. Front. Syst. Neurosci., 13 July 2010.

DOI

Tobias Heimann, François Chung, Hans Lamecker, Hervé Delingette (2010). Subject Specific Ligament Models Toward Real Time Simulation of the Knee Joint. Miller K., Nielsen P. (eds) Computational Biomechanics for Medicine. Springer, New York, NY (2010).

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Heiko Seim, Dagmar Kainmueller, Hans Lamecker, Stefan Zachow (2009). A System for Unsupervised Extraction of Orthopaedic Parameters From CT Data. GI Workshop ‘Softwareassistenten - Computerunterstützung für die medizinische Diagnose und Therapieplanung’, pp. 1328-1337, 2009.

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Dagmar Kainmueller, Hans Lamecker, Stefan Zachow (2009). Multi-Object Segmentation With Coupled Deformable Models. Annals of the BMVA Vol. 2009, No. 5, pp 1–10 (2009).

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Hans Lamecker, Tommaso Mansi, Jatin Relan, Florence Billet, Maxime Sermesant, Nicholas Ayache, Hervé Delingette (2009). Adaptive Tetrahedral Meshing for Personalized Cardiac Simulations. CI2BM09 - MICCAI Workshop on Cardiovascular Interventional Imaging and Biophysical Modelling, Sep 2009, London, United Kingdom. pp.149-158.

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Dagmar Kainmueller, Hans Lamecker, Stefan Zachow, Hans-Christian Hege (2009). An Articulated Statistical Shape Model for Accurate Hip Joint Segmentation. Annual International Conference of the IEEE Engineering in Medicine and Biology Society, Minneapolis, MN, 2009, pp. 6345-6351.

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Dagmar Kainmueller, Hans Lamecker, Heiko Seim, Max Zinser, Stefan Zachow (2009). Automatic Extraction of Mandibular Nerve and Bone From Cone Beam CT Data. Yang GZ., Hawkes D., Rueckert D., Noble A., Taylor C. (eds) Medical Image Computing and Computer-Assisted Intervention – MICCAI 2009. MICCAI 2009. Lecture Notes in Computer Science, vol 5762. Springer, Berlin, Heidelberg.

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Jalda Dworzak, Hans Lamecker, Jens von Berg, Tobias Klinder, Cristian Lorenz, Dagmar Kainmueller, Heiko Seim, Hans-Christian Hege, Stefan Zachow (2009). 3D Reconstruction of the Human Rib Cage From 2D Projection Images Using a Statistical Shape Model. Int J CARS 5, 111–124 (2010).

DOI

Dagmar Kainmueller, Hans Lamecker, Heiko Seim, Stefan Zachow (2009). Multi-Object Segmentation of Head Bones. The MIDAS Journal - Head and Neck Auto-Segmentation Challenge (2009).

Paper Journal

Stefan Zachow, Hans Lamecker, Maja Zöckler, Ernst Johannes Haberl (2009). Computergestützte Planung zur Chirurgischen Korrektur Von frühkindlichen Schädelfehlbildungen (Craniosynostosen). face - international magazine of orofacial esthetics, 02/09, pp. 48-53, 2009.

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Tobias Heimann, Bram van Ginneken, Martin A. Styner, Yulia Arzhaeva, Volker Aurich, Christian Bauer, Andreas Beck, Christoph Becker, Reinhard Beichel, György Bekes, Fernando Bello, Gerd Binnig, Horst Bischof, Alexander Bornik, Peter M. M. Cashman, Ying Chi, Andrés Cordova, Benoit M. Dawant, Márta Fidrich, Jacob D. Furst, Daisuke Furukawa, Lars Grenacher, Joachim Hornegger, Dagmar Kainmueller, Richard I. Kitney, Hidefumi Kobatake, Hans Lamecker, Thomas Lange, Jeongjin Lee, Brian Lennon (2009). Comparison and Evaluation of Methods for Liver Segmentation From CT Datasets. IEEE Transactions on Medical Imaging, vol. 28, no. 8, pp. 1251-1265, Aug. 2009.

DOI

Hans Lamecker (2008). Variational and Statistical Shape Modeling for 3D Geometry Reconstruction. PhD thesis in mathematics and computer science, Freie Universität Berlin.

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Thomas Lange, Nils Papenberg, Stefan Heldmann, Jan Modersitzki, Bernd Fischer, Hans Lamecker, Peter M. Schlag (2008). 3D Ultrasound-CT Registration of the Liver Using Combined Landmark Intensity Information. Int J CARS 4, 79–88 (2009).

DOI

Jalda Dworzak, Hans Lamecker, Jens von Berg, Tobias Klinder, Cristian Lorenz, Dagmar Kainmueller, Heiko Seim, Hans-Christian Hege, Stefan Zachow (2008). Towards Model Based 3-D Reconstruction of the Human Rib Cage From Radiographs. Proc. 7. Jahrestagung der Deutschen Gesellschaft für Computer-Roboterassistierte Chirurgie (CURAC), 2008..

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Heiko Seim, Dagmar Kainmueller, Markus Heller, Hans Lamecker, Stefan Zachow, Hans-Christian Hege (2008). Automatic Segmentation of the Pelvic Bones From CT Data Based on a Statistical Shape Model. EG VCBM'08: Proceedings of the First Eurographics conference on Visual Computing for BiomedicineOctober, 2008, Pages 93–100.

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Jochen Singer (2008). Entwicklung einer Anpassungsstrategie zur Autosegmentierung des Gehirns der Honigbiene Apis Mellifera mittels einem Statistischen Formmodell. Bachelor thesis in Bioinformatics, Freie Universität Berlin.

Jan Sahner, Britta Weber, Hans Lamecker, Steffen Prohaska (2008). Extraction of Feature Lines on Surface Meshes Based on Discrete Morse Theory. Computer Graphics Forum, 27: 735-742 (2008).

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Jochen Singer, Matthias Lienhard, Heiko Seim, Dagmar Kainmueller, Anja Kuss, Hans Lamecker, Stefan Zachow, Randolf Menzel, Jürgen Rybak (2008). Model-based autosegmentation of the central brain of the honeybee, Apis mellifera, using active shape models.

DOI

Michael Zilske, Hans Lamecker, Stefan Zachow (2008). Adaptive Remeshing of Non Manifold Surfaces. Eurographics 2008, Annex to the Conf. Proc., 2008, pp. 207-211.

Preprint

Chavdar Papazov, Vincent J. Dercksen, Hans Lamecker, Hans-Christian Hege (2008). Visualizing Morphogenesis and Growth by Temporal Interpolation of Surface-Based 3D Atlases. 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Paris, 2008, pp. 824-827.

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Dagmar Kainmueller, Hans Lamecker, Stefan Zachow, Hans-Christian Hege (2008). Coupling Deformable Models for Multi Object Segmentation. Bello F., Edwards P.J.E. (eds) Biomedical Simulation. ISBMS 2008. Lecture Notes in Computer Science, vol 5104. Springer, Berlin, Heidelberg.

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Thomas Lange, Hans Lamecker, Michael Hünerbein, Sebastian Eulenstein, Sigfried Beller, Peter M. Schlag (2008). Validation Metrics for Non Rigid Registration of Medical Images Containing Vessel Trees. Tolxdorff T., Braun J., Deserno T.M., Horsch A., Handels H., Meinzer HP. (eds) Bildverarbeitung für die Medizin 2008. Informatik aktuell. Springer, Berlin, Heidelberg.

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Heiko Seim, Hans Lamecker, Markus Heller, Stefan Zachow (2008). Segmentation of Bony Structures With Ligament Attachment Sites. Tolxdorff T., Braun J., Deserno T.M., Horsch A., Handels H., Meinzer HP. (eds) Bildverarbeitung für die Medizin 2008. Informatik aktuell. Springer, Berlin, Heidelberg..

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Matthias Lienhard (2008). Aufbau und Analyse eines Statistischen Formmodells des Gehirns der Honigbiene Apis Mellifera. Bachelor thesis in Bioinformatics, Freie Universität Berlin.

Thomas Lange, Hans Lamecker, Hans-Christian Hege, Peter Deuflhard, Peter M. Schlag (2008). Computerassistierte Leberchirurgie: Wie Computer die Leber in Medizinischen Bilddaten automatisch erkennen. Berlin Medical Journal, Heft 1, January, 2008.

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Michael Zilske (2007). Adaptives Remeshing von Nicht-Mannigfaltigen Dreicksnetzen. Diploma thesis in Computer Science, Freie Universität Berlin.

Dagmar Kainmueller, Thomas Lange, Hans Lamecker (2007). Shape-Constrained Automatic Segmentation of the Liver Based on a Heuristic Intensity Model. Proc. MICCAI Workshop on 3D Segmentation in the Clinic: A Grand Challenge (T. Heimann at al., eds.), pp. 109-116, 2007.

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Hans Lamecker, Lukas Kamer, Antonia Wittmers, Stefan Zachow, Thomas Kaup, Alexander Schramm, Hansrudi Noser, Beat Hammer (2007). A Method for the Three Dimensional Statistical Shape Analysis of the Bony Orbit. Proc. Computer Aided Surgery around the Head (CAS-H) (W. Freysinger et al., eds.), Pro Business Verlag, pp. 94-97, 2007.

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Kerstin Neubert (2007). Model Based Autosegmentation of Brain Structures in the Honeybee Apis Mellifera. Bachelor thesis in Bioinformatics, Freie Universität Berlin.

Kerstin Neubert, Hans Lamecker, Hans-Christian Hege, Randolf Menzel, Jürgen Rybak (2007). Model-based Autosegmentation of Brain Structures in the Honeybee using Statistical Shape Models. Proc. 8th Int. Congr. of Neuroethology (ICN), 2007.

Conference

Thomas Lange, Michael Hünerbein, Sebastian Eulenstein, Sigfried Beller, Peter M. Schlag, Hans Lamecker (2007). A Distance Measure for Non Rigid Registration of Geometrical Models to Intensity Data. Image Processing and Visualization ISCAS. Int J CARS 2, 204–217 (2007).

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Thomas Lange, Hans Lamecker, Michael Hünerbein, Sebastian Eulenstein, Siegfried Beller, Peter M. Schlag (2007). A New Class of Distance Measures for Registration of Tubular Models to Image Data. Horsch A., Deserno T.M., Handels H., Meinzer HP., Tolxdorff T. (eds) Bildverarbeitung für die Medizin 2007. Informatik aktuell. Springer, Berlin, Heidelberg.

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Maja Zöckler (2006). Modellgebundene Cranioplastie Operationstechnik zur Umformung frühkindlicher Schäüdeldeformitaeten unter Verwendung Dreidimensionaler Standardformmodelle. PhD thesis in Medicine, Humboldt Universität Berlin.

Hans Lamecker, Thomas Wenckebach, Hans-Christian Hege (2006). Atlas-based 3D-Shape Reconstruction from X-Ray Images. 8th International Conference on Pattern Recognition (ICPR'06), Hong Kong, 2006, pp. 371-374.

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Hans Lamecker, Stefan Zachow, Antonia Wittmers, Britta Weber, Hans-Christian Hege, Barbara Elsholtz, Michael Stiller (2006). Automatic Segmentation of Mandibles in Low Dose CT Data. A New Cone-beam Computed Tomography System for Dental Applications with Innovative 3D Software. Int J CARS 1, 393-395 (2006).

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Hans Lamecker, Stefan Zachow, Hans-Christian Hege, Maja Zöckler, Hannes Haberl (2006). Surgical Treatment of Craniosynostosis Based on a Statistical 3D Shape Model: First Clinical Application. Computer Supported Pre-operative Simulation of Neonatus Cranial Bone Bending in Craniosynostosis Surgery Planning. Int J CARS 1(1), 253-254 (2006).

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Stefan Zachow, Hans Lamecker, Barbara Elsholtz, Michael Stiller (2006). Is the Course of the Mandibular Nerve Deducible From the Shape of the Mandible?. Image-Guided Implantology and Bone Assessment. Int J CARS 1(1), 415-417 (2006).

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Hans Lamecker, Thomas Wenckebach, Hans-Christian Hege, Georg N. Duda, Markus Heller (2006). Atlas-basierte 3D-Rekonstruktion des Beckens aus 2D-Projektionsbildern. Handels H., Ehrhardt J., Horsch A., Meinzer HP., Tolxdorff T. (eds) Bildverarbeitung für die Medizin 2006. Informatik aktuell. Springer, Berlin, Heidelberg.

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Philipp Beckmann (2006). Consistent Cell Decomposition of Homeomorphic Simplicial Surfaces. Diploma thesis in Mathematics, Freie Universität Berlin.

Thomas Lange, Thomas Wenckebach, Hans Lamecker, Martin Seebass, Michael Hünerbein, Sebastian Eulenstein, Peter M. Schlag (2006). Registration of different phases of contrast‐enhanced CT/MRI data for computer‐assisted liver surgery planning: Evaluation of state‐of‐the‐art methods. Int. J. Med. Robotics Comput. Assist. Surg., 1: 6-20 (2006).

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Hans Lamecker, Stefan Zachow, Hannes Haberl, Michael Stiller (2005). Medical Applications for Statistical 3D Shape Models. Proc. Computer Aided Surgery around the Head (CAS-H), Fortschritt-Berichte VDI (S. Weber et al., eds.), 17 (258), p. 61, 2005.

Thomas Wenckebach, Hans Lamecker, Hans-Christian Hege (2005). Capturing Anatomical Shape Variability Using B-Spline Registration. Christensen G.E., Sonka M. (eds) Information Processing in Medical Imaging. IPMI 2005. Lecture Notes in Computer Science, vol 3565. Springer, Berlin, Heidelberg.

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Thomas Lange, Thomas Wenckebach, Hans Lamecker, Martin Seebass, Michael Hünerbein, Sebastian Eulenstein, Peter M. Schlag (2005). Registration of Portal and Hepatic Venous Phase of MR/CT Data for Computer Assisted Liver Surgery Planning. Proc. Computer Assisted Radiology and Surgery (CARS) (H. Lemke et al, eds.), Int. Congress Series (1281), Elsevier, pp. 768-772, 2005.

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Stefan Zachow, Hans Lamecker, Barbara Elsholtz, Michael Stiller (2005). Reconstruction of Mandibular Dysplasia Using a Statistical 3D Shape Model. Proc. Computer Assisted Radiology and Surgery (CARS) (H. Lemke et al, eds.), Int. Congress Series (1281), Elsevier, pp. 1238-1243, 2005.

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Hans Lamecker, Maja Zöckler, Hannes Haberl, Stefan Zachow, Hans-Christian Hege (2005). Statistical Shape Modeling for Craniosynostosis Planning. Proc. 2nd International Congress on Advanced Digital Technology in Head and Neck Reconstruction, 2005.

Conference

Thomas Wenckebach (2004). Volumetrische Registrierung Zur Medizinischen Bildanalyse. Diploma thesis in Computer Science, Humboldt Universität Berlin.

Thomas Lange, Thomas Wenckebach, Martin Seebass, Hans Lamecker, Michael Hünerbein (2004). Registration of Different Phases of Contrast Enhanced MR Data for Liver Surgery. Proc. 3. Jahrestagung der Deutschen Gesellschaft für Computer-Roboterassistierte Chirurgie (CURAC), 2004.

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Thomas Lange, Sebastian Eulenstein, Michael Hünerbein, Hans Lamecker, Peter M. Schlag (2004). Augmenting Intraoperative 3D Ultrasound with Preoperative Models for Navigation in Liver Surgery. In: Barillot C., Haynor D.R., Hellier P. (eds) Medical Image Computing and Computer-Assisted Intervention – MICCAI 2004. MICCAI 2004. Lecture Notes in Computer Science, vol 3217. Springer, Berlin, Heidelberg.

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Sebastian Eulenstein, Thomas Lange, Michael Hünerbein, Peter M. Schlag, Hans Lamecker (2004). Ultrasound Based Navigation System Incorporating Preoperative Planning for Liver Surgery. Proc. Computer Assisted Radiology and Surgery (CARS) (H. Lemke et al, eds.), International Congress Series, Volume 1268, June 2004, Pages 758-763.

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Martin Seebass, Hans Lamecker, Johanna Gellermann, Peter Wust (2004). The Impact of Segmentation Accuracy on Treatment Planning for Regional Hyperthermia. Proc. of the 9th International Congress on Hyperthermic Oncology (2004).

Hannes Haberl, Bertold Hell, Maja Zöckler, Stefan Zachow, Hans Lamecker, Asita Sarrafzadeh, B. Riecke, Wolfgang Langsch, Peter Deuflhard, Jürgen Bier, Mario Brock (2004). Technical Aspects and Results of Surgery for Craniosynostosis. Zentralbl Neurochir 2004; 65(2): 65-74.

DOI Pubmed

Hans Lamecker, Martin Seebass, Hans-Christian Hege, Peter Deuflhard (2004). A 3D Statistical Shape Model of the Pelvic Bone for Segmentation. Proc. SPIE 5370, Medical Imaging 2004: Image Processing, (12 May 2004).

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Thomas Wenckebach (2004). Das Korrespondenzproblem für Statistische 3D-Formmodelle in Biomedizinischen Anwendungen. Study report in Computer Science, Humboldt Universität Berlin.

Thomas Lange, Per-Ulf Tunn, Hans Lamecker, Peter Scheinemann, Sebastian Eulenstein, Peter M. Schlag (2004). Computerunterstützte Prothesenkonstruktion mittels statistischem Formmodell bei Beckenresektion. Bildverarbeitung für die Medizin 2004. Informatik aktuell.

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Hans Lamecker, Martin Seebass, Thomas Lange, Hans-Christian Hege, Peter Deuflhard (2004). Visualization of the Variability of 3D Statistical Shape Models by Animation. Proc. MMVR 2004; Stud Health Technol Inform. 2004;98:190-6..

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Hans Lamecker, Thomas Lange, Martin Seebass (2003). Erzeugung statistischer 3D-Formmodelle zur Segmentierung medizinischer Bilddaten. Bildverarbeitung für die Medizin 2003. Informatik aktuell.

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Thomas Lange, Hans Lamecker, Martin Seebass (2003). Ein Softwarepaket für die modellbasierte Segmentierung anatomischer Strukturen. Bildverarbeitung für die Medizin 2003. Informatik aktuell.

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Hans Lamecker, Thomas Lange, Martin Seebass, Sebastian Eulenstein, Malte Westerhoff, Hans-Christian Hege (2003). Automatic Segmentation of the Liver for Preoperative Planning of Resections. Proc. MMVR 2003; Stud Health Technol Inform. 2003; 94:171-3.

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Martin Seebass, Hans Lamecker, Thomas Lange, Johanna Gellermann, Peter Wust (2003). A Statistical Shape Model of the Pelvic Bone for Segmentation. Proc. European Society for Hypertermic Oncology (ESHO), pp. 91-92, 2003.

Thomas Lange, Hans Lamecker, Martin Seebass, Sebastian Eulenstein (2002). Automatische Segmentierung von Lebergewebe für die Präoperative Planung von Resektionen. Proc. 1. Jahrestagung der Deutschen Gesellschaft für Computer- Roboterassistierte Chirurgie (CURAC), 2002.

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Hans-Christian Hege, Hartmut Schirmacher, Malte Westerhoff, Hans Lamecker, Steffen Prohaska, Stefan Zachow (2002). From Image Data to Three Dimensional Models Case Studies on the Impact of 3D Patient Models. Proc. of the Japan Korea Computer Graphics Conference 2002.

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Hans Lamecker, Thomas Lange, Martin Seebass (2002). A Statistical Shape Model for the Liver. Medical Image Computing and Computer-Assisted Intervention — MICCAI 2002.

DOI Preprint

Hans Lamecker (2000). Die Chirale Dynamik der starken Wechselwirkung und das Lineare Quark Meson Modell.

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